We have a couple of tutorials and guides to offer, this page will lead you to them:

with python

  • read mzQC: Open In Colab
  • write mzQC: Open In Colab
  • demo video

with R


If you have many mzQC files to validate, or the validation API is temporaily unreachable, you can set up your own validation process without much effort!


The container solution is the least effort, but requires you have the singularity container engine installed.

Local Installation of pymzqc

This solution requires you to install pymzqc. In most cases it will be as easy as simply pip install pymzqc. For all the latest instructions on installation of pymzqc and validation, see its repository.


If you are new to JSON or file formats (with JSON), the next few links should provide you with an overview:


Ontologies also known as controlled vocabularies are used in mzQC to manage metric definitions and metric value content. Here is a list of links and documents that should help you out in case you want to know more.