Tutorials

We have a couple of tutorials and guides to offer, this page will lead you to them:

with python

• read mzQC:
• write mzQC:
• demo video

with R

• rmzQC
• PTXQC demo

JSON

If you are new to JSON or file formats (with JSON), the next few links should provide you with an overview:

• JSON (by W3C)
• JSON (by mozilla)
• File format schemas with JSON
• JSON crash course (by freecodecamp)

Ontologies

Ontologies also known as controlled vocabularies are used in mzQC to manage metric definitions and metric value content. Here is a list of links and documents that should help you out in case you want to know more.

• Ontologies are powerful tools, we mostly use them as controlled vocabularies
• The W3C has a bit broader explanation of ontologies
• Visit the HUPO-PSI webpage for more information on CV use in different settings.
• Browse our controlled vocabulary terms on OLS
• If you want to start with the foundations and get ambitious here are the resources from protege for ontology development
• Luckily, we have all the relevant metrics and terms in PSI-MS CV (_{so no Ontology Dowsing necessary})